Lola
(2005)
A bioinformatics tool for extraction and pairwise comparison of genetic sequences.
(Led to publication in Oxford Journal)
- Fully configurable sequence extractor (positions, length, offsets, exclusion, ..)
- Multiple, extensible set of distance-methods (elementwise, edit-distance, ..)
- Instant manual comparison of two or more elements
- Automatic cross-comparison of all elements (within one or two sets) with distance-threshold
- Window-Scan with fully configurable parameters (start, stop, window size, )
- Sliding window-scanning
- Clustering and visualization with indiji-dot-engine